Cheap Flights from Manila Ninoy Aquino to El Nido

Travellers and cabin class

Compare Manila Ninoy Aquino to El Nido flight deals

Find the cheapest month or even day of the year to fly to El Nido

Book the best El Nido fare with no extra fees

Flight deals from Manila Ninoy Aquino to El Nido

Looking for a cheap last-minute deal or the best return flight from Manila Ninoy Aquino to El Nido? Find the lowest prices on one-way and return tickets right here.

Find the cheapest month to fly from Manila Ninoy Aquino to El Nido

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like Manila Ninoy Aquino to El Nido flights are currently cheapest in September.

Direct flights from Manila Ninoy Aquino to El Nido

Manila Ninoy Aquino to El Nido: Alternative routes

Compare routes from Manila Ninoy Aquino to El Nido below. You may find an airport to fly into that's cheaper, faster, or easier than El Nido.

Manila to El Nido: Flight information

The things to know before you go.
Cheapest flight foundR 1,515
Cheapest month to flySeptember
Average flight time1 hr, 30 mins
Most popular airlineAir Swift
Average flights per week50

Finding cheap flights from Manila Ninoy Aquino to El Nido: Frequently asked questions

The best price we found for a return flight from Manila Ninoy Aquino to El Nido is R 2,673. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.
1 hour and 30 minutes is the average flight time from Manila Ninoy Aquino to El Nido.
Air Swift flies direct from Manila Ninoy Aquino to El Nido.
As of March 2025, there are 50 flights per week flying from Manila Ninoy Aquino to El Nido.
The cheapest month to fly from Manila Ninoy Aquino to El Nido is usually March 2025.
After crunching the numbers on our flight calendar, we found that it's currently cheapest to fly from Manila Ninoy Aquino Airport to El Nido Airport on Thursday, 28 August 2025.
Yes – the average flight time is 1 hour and 30 minutes.
We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to El Nido but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.
We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to El Nido is around 40 days in advance, so don’t leave your flight to the last minute.
Currently, Cebu Pacific and Air Swift offer the cheapest flight tickets to El Nido.

Flying from Ninoy Aquino International Airport (MNL) to El Nido Airport (ENI): what you need to know

  • Expect to be in the skies for 1 hour 30 minutes. That's the average time for a direct flight from Ninoy Aquino International Airport to El Nido Airport. El Nido and Manila have the same timezone — UTC+8.

  • Each week, there are 35 flights from Ninoy Aquino International Airport to El Nido Airport. The earliest departure from MNL to ENI is at 05:10 and the latest is at 17:25.

  • You can expect longer lines in popular months such as July and other peak periods. Arriving up to fours hours ahead of international flights and two hours for a domestic departure is a wise move.

  • Once you've found cheap ticket from MNL to ENI, get your travel documents in order. A visa or passport isn't needed as you're travelling within Philippines. As long as you have another form of identification, such as an ID card or driver's license, you're all set.

How to find the cheapest flights from Ninoy Aquino International Airport (MNL) to El Nido Airport (ENI)

  • R 1,515 is currently the best price for a one-way ticket from Ninoy Aquino International Airport to El Nido Airport. A return flight starts at R 2,673. These prices can change depending on availability and demand.

  • Don't leave things to the last moment. You're more likely to get cheap tickets from MNL to ENI if you book early. Airlines often have some amazing early bird discounts.

  • Schedule your trip for August. That's the cheapest month for tickets from Ninoy Aquino International Airport to El Nido Airport. If you're flexible with your dates, use the 'Whole month' tool to see the lowest price across every month.

  • Log into your online account or use the app to create a Price Alert. You'll be notified right away if there's a cheaper deal on this route. It doesn't take long, and it'll save you the hassle of checking for cheap tickets from MNL to ENI every day.

  • Take advantage of filters to find the perfect trip for you. To see the 'Cheapest,' 'Fastest' or 'Best' flights from Ninoy Aquino International Airport to El Nido Airport, use the 'Sort by' tool. You can also filter results by departure and arrival times, airline, and journey duration.

Handy information about Ninoy Aquino International Airport (MNL)

  • Located around 13 kilometres from the centre of Manila, Ninoy Aquino International Airport can be reached in about 34 minutes by car (depending on traffic). The same journey on public transport is roughly 1 hour and 16 minutes.

  • Booked an early flight from Ninoy Aquino International Airport to El Nido Airport? Avoid the last-minute rush to the airport (and enjoy a little extra shut-eye) by picking one of these stays close to MNL:

Arriving at El Nido Airport (ENI)

Getting from El Nido Airport (ENI) to central El Nido

  • El Nido Airport to central El Nido is about 3 minutes by car. It's approximately 2 kilometres away. Discover what options are available, such as car rentals, cabs or ride-sharing.

  • If you're travelling by public transport, expect a journey time of roughly 15 minutes.

When to fly to El Nido Airport (ENI)

  • It's time to choose your travel dates for your flight from Ninoy Aquino International Airport to El Nido Airport. May is the busiest month to visit El Nido. If you want a more relaxed vibe, go in February.

  • Lock in your flight from Ninoy Aquino International Airport to El Nido Airport for May if you want to go to El Nido during its warmest month. Expect temperatures of between 26ºC and 30ºC.

  • February has average temperatures of between 25ºC and 29ºC. Search for cheap tickets from MNL to ENI sometime then if you want to travel in cooler conditions.

More about El Nido

Complete your El Nido trip with hotels and a car rental

  • After you've secured your cheap ticket to El Nido Airport, check out the lowest prices and exclusive offers on hotels. You can also compare hundreds of car rental companies in one place to find the best car rental price for your El Nido escape.

Prices shown on this page are estimated lowest prices only. Found in the last 45 days.