Cheap Flights from San Juan to Panama City

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Flight deals from San Juan to Panama City

Looking for a cheap last-minute deal or the best return flight from San Juan to Panama City? Find the lowest prices on one-way and return tickets right here.

Find the cheapest month to fly from San Juan to Panama City

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like San Juan to Panama City flights are currently cheapest in March.

Direct flights from San Juan to Panama City

Alternative San Juan to Panama City routes

Looking for the cheapest, fastest or easiest route from San Juan to Panama City? You could fly into the following airports instead.

San Juan to Panama City: Flight information

The things to know before you go.
Cheapest flight foundR 1,326
Cheapest month to flyMarch
Average flight time3 hrs, 3 mins
Most popular airlineCopa
Average flights per week28

Finding cheap flights from San Juan to Panama City: Frequently asked questions

There are 3 airports in Panama City: Panama City Paitilla, Balboa and Panama City Tocumen International.
The best price we found for a return flight from San Juan to Panama City is R 3,597. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.
3 hours and 3 minutes is the average flight time from San Juan to Panama City.
Copa and KLM fly direct from San Juan to Panama City.
As of March 2025, there are 112 flights per week flying from San Juan to Panama City.
The cheapest month to fly from San Juan to Panama City is usually March 2025.
If you're flying from San Juan, the cheapest airport near Panama City is Panama City Tocumen International – which is 17.9 km away from the centre of Panama City. We've found flights into this airport from R 3,597.
After crunching the numbers on our flight calendar, we found that it is currently cheapest to fly from San Juan to Panama City on Saturday, 18 October 2025.
Yes – the average flight time is 3 hours and 3 minutes.
We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to Panama City but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.
We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to Panama City is around 40 days in advance, so don’t leave your flight to the last minute.
In March, the average temperature is usually around 28°C. May is typically the warmest month in Panama City, when it usually averages around 29°C. You can expect the least rain in February. The coldest month is October, with temperatures averaging 25°C. The rainiest month is June.
The cheapest airline that flies to Panama City is Avianca. And the cheapest airline that flies to Balboa Airport is Copa.

Travelling from San Juan to Panama City: what you need to know

  • Planning your trip begins with working out where you'll fly out of in San Juan. Luis Munoz Marin International Airport (SJU) is the city's main base, so check out your options for booking a flight from San Juan to Panama City departing from here.

  • Tocumen International Airport (PTY) and Panama Pacifico Airport (BLB) are Panama City's primary hubs.

  • A direct flight from San Juan to Panama City takes an average of 3 hours 1 minute. The timezone in Panama City is UTC-5, which makes it 1 hour behind San Juan.

  • The busiest route for flights from San Juan to Panama City is from Luis Munoz Marin International Airport (SJU) to Tocumen International Airport (PTY). There are 29 services every week between these two airports. If you'd like to head off first thing, the earliest flight from SJU to PTY is the 06:00 Copa Airlines option. If you prefer travelling later, the final departure is at 17:48 with Copa Airlines.

  • To ensure you get on your flight from San Juan to Panama City, leave plenty of time to check in and drop off your luggage. Turning up two hours ahead of international departures and an hour before domestic flights is the general rule.

  • During popular months such as July, you'll want to get to the airport even earlier. Arrive two hours before a domestic departure and four hours ahead of international flights when you fly during peak periods in general.

  • You won't need a visa for Panama if you hold a passport from Puerto Rico and are visiting for tourism purposes. Visa and travel documentation requirements are subject to change. So before booking your cheap flights from San Juan to Panama City, check with your airline and your destination country's local consulate or embassy for up-to-date information.

Flying from San Juan

Luis Munoz Marin International Airport (SJU)

  • Set out from Luis Munoz Marin International Airport (SJU) on a nonstop flight from San Juan to Panama City. From SJU, you can land directly at Tocumen International Airport (PTY).

  • You can travel on a direct flight from San Juan to Panama City with Copa Airlines. This popular carrier operates services from SJU.

  • We make it easy to plan a flight from San Juan to Panama City with a stopover. To see all your options departing from Luis Munoz Marin International Airport, deselect 'Direct flights only.' Then, choose a flight offering a stop long enough to tour the city of your choice. Some popular stopovers include:

    • Princess Juliana International Airport (SXM)

    • Punta Cana International Airport (PUJ)

    • Las Americas International Airport (SDQ)

  • Located around 8 kilometres from central San Juan, SJU can be reached in about 11 minutes by car, depending on traffic. The same journey on public transport will take roughly 56 minutes.

  • Need a convenient hotel near Luis Munoz Marin International Airport? If you've booked an early flight from San Juan to Panama City, these stays will put you moments from check-in:

Arriving in Panama City

Tocumen International Airport (PTY)

Marcos A. Gelabert International Airport (PAC)

How to find the cheapest flights from San Juan to Panama City

  • R 1,326 is currently the lowest price for a one-way ticket from San Juan to Panama City. Return flights start from R 3,597. These fares can change depending on availability.

  • Score cheap tickets from San Juan to Panama City by booking at least 8 months ahead. According to our research, that's the sweet spot for picking up a bargain.

  • Schedule your trip for April. That's the cheapest month for tickets from San Juan to Panama City. If you're flexible with your dates, use the 'Whole month' tool to see the lowest price across every month.

  • Log into your online account or use the app to set up a Price Alert. You'll get notified right away if there's a cheaper deal on this route. It's easy to do, and it'll save you the hassle of searching for cheap tickets from San Juan to Panama City every day.

  • Tailor your travel plans using filters. Select your departure and arrival times, total journey duration and airlines. You can also sort the results by 'Best,' 'Fastest' or 'Cheapest' flights from San Juan to Panama City.

Best time to go to Panama City

  • It's time to pick your trip dates for your flight from San Juan to Panama City. June is the busiest month to visit Panama City. If you prefer a more peaceful vibe, go in February.

  • Lock in your flight from San Juan to Panama City for March if you want to visit the city during its warmest month. Expect temperatures in Panama City to range from 21ºC to 32ºC.

  • Search for cheap tickets from San Juan to Panama City in February if you'd rather travel during cooler conditions. Temperatures are at their lowest then, ranging between 22ºC and 31ºC on average.

More about Panama City

  • When it comes to searching for somewhere to lay your head, you'll find the best places to stay in Panama City right here. Check out these options as soon as you've booked your flight from San Juan to Panama City:

  • Panama Canal Museum and Casco Viejo are just a couple of the big attractions to add to your Panama City itinerary. Keep the sightseeing going at Cinta Costera.

Complete your Panama City trip with a car rental

  • Explore our range of car rentals once you've found your hotel and cheap flight from San Juan to Panama City. Whether you're after a compact ride, family sedan or something more luxurious, you can compare companies in one go to get the best deal.

Prices shown on this page are estimated lowest prices only. Found in the last 45 days.